Numerical Verification
ManifoldsBase.check_geodesic — Functioncheck_geodesic(
M::AbstractManifold,
p=rand(M),
X=rand(M; vector_at=p);
#
tol::Real = 1e-12,
io::Union{IO,Nothing} = nothing,
N::Int = 101,
name::String = "geodesic",
plot::Bool = false,
error::Symbol = :none,
inverse_retraction_method::AbstractInverseRetractionMethod = LogarithmicInverseRetraction(),
vector_transport_method::AbstractVectorTransportMethod = ParallelTransport(),
)Numerically check whether the geodesic implementation is correct. This check requires both the log and parallel_transport_to functions to be implemented in order to an exact numerical verification. We further require the norm function to be implemented for the AbstractManifold M.
You can provide an inverse_retraction_method and vector_transport_method to be used, but the verification will then be less accurate.
The tests performed are the following based on sampling the geodesic $\gamma(t) =$geodesic(M, p, X) at N equidistant points $t_i = i/(N-1)$, i=0,...,N-1 we denote by $p_i = \gamma(t_i)$
- Compute the norms of the tangent vectors $\dot\gamma(t_i) ≈ X_i = \log_{p_i}(p_{i+1})$, $i=0,...,N-2$ and check how far these norms deviate from their mean value.
- Check how far this mean deviates from being $\frac{||X||}{N-1}$
- Check that the parallel transport of each $X_i$ from $p_i$ to $p_{i+1}$ is close to $X_{i+1}$.
Arguments
M: the manifold to checkp: point on the manifold to start the geodesic, a random point is used by defaultX: tangent vector atpto start the geodesic, a random tangent vector is used by default
Keyword arguments
tol: if all errors are below this tolerance, the geodesic is considered to be exactio: provide anIOto print the result toN: number of points to sample the geodesic on $[0,1]$ (default: 101)plot: whether to plot the result (ifPlots.jlis loaded).error: specify how to report errors::none,:info,:warn, or:errorare availableinverse_retraction_method: method to use for the inverse retraction, it is recommended to useLogarithmicInverseRetractionvector_transport_method: method to use for the vector transport, it is recommended to useParallelTransport
Note that since the plot yields more information than throwing an error, when both are specified, the plot is generated first and returned (to be shown/displayed), such that no error is thrown. You can switch to e.g. :warn to get a warning together with the plot.
ManifoldsBase.check_inverse_retraction — Functioncheck_inverse_retraction(
M::AbstractManifold,
inverse_rectraction_method::AbstractInverseRetractionMethod,
p=rand(M),
X=rand(M; vector_at=p);
#
exactness_tol::Real = 1e-12,
io::Union{IO,Nothing} = nothing,
limits::Tuple = (-8.0, 0.0),
log_range::AbstractVector = range(limits[1], limits[2]; length=N),
N::Int = 101,
name::String = "inverse retraction",
plot::Bool = false,
second_order::Bool = true
slope_tol::Real = 0.1,
error::Symbol = :none,
window = nothing,
)Check numerically wether the inverse retraction inverse_retraction_method is correct. This requires the exp and norm functions to be implemented for the AbstractManifold M.
This implements a method similar to [Bou23, Section 4.8 or Section 6.8].
Note that if the errors are below the given tolerance and the method is exact, no plot is generated,
Keyword arguments
exactness_tol: if all errors are below this tolerance, the inverse retraction is considered to be exactio: provide anIOto print the result tolimits: specify the limits in thelog_range, that is the exponent for the rangelog_range: specify the range of points (in log scale) to sample the length of the tangent vectorXN: number of points to verify within thelog_rangedefault range $[10^{-8},10^{0}]$name: name to display in the plotplot: whether to plot the result (seeplot_slope) The plot is in log-log-scale. This is returned and can then also be saved.second_order: check whether the retraction is of second order. if set tofalse, first order is checked.slope_tol: tolerance for the slope (global) of the approximationerror: specify how to report errors::none,:info,:warn, or:errorare availablewindow: specify window sizes within thelog_rangethat are used for the slope estimation. the default is, to use all window sizes2:N.
Note that since the plot yields more information than throwing an error, when both are specified, the plot is generated first and returned (to be shown/displayed), such that no error is thrown. You can switch to e.g. :warn to get a warning together with the plot.
ManifoldsBase.check_retraction — Functioncheck_retraction(
M::AbstractManifold,
rectraction_method::AbstractRetractionMethod,
p=rand(M),
X=rand(M; vector_at=p);
#
exactness_tol::Real = 1e-12,
io::Union{IO,Nothing} = nothing,
limits::Tuple = (-8.0, 0.0),
log_range::AbstractVector = range(limits[1], limits[2]; length=N),
N::Int = 101,
name::String = "retraction",
plot::Bool = false,
second_order::Bool = true
slope_tol::Real = 0.1,
error::Symbol = :none,
window = nothing,
)Check numerically whether the retraction vector_transport_to is correct, by selecting a set of points $q_i = \exp_p (t_i X)$ where $t$ takes all values from log_range, to then compare parallel_transport_to to the vector_transport_method applied to the vector Y.
This requires the exp, parallel_transport_to and norm function to be implemented for the AbstractManifold M.
This implements a method similar to [Bou23, Section 4.8 or Section 6.8].
Note that if the errors are below the given tolerance and the method is exact, no plot is generated,
Keyword arguments
exactness_tol: if all errors are below this tolerance, the retraction is considered to be exactio: provide anIOto print the result tolimits: specify the limits in thelog_range, that is the exponent for the rangelog_range: specify the range of points (in log scale) to sample the length of the tangent vectorXN: number of points to verify within thelog_rangedefault range $[10^{-8},10^{0}]$name: name to display in the plotplot: whether to plot the result (ifPlots.jlis loaded). The plot is in log-log-scale. This is returned and can then also be saved.second_order: check whether the retraction is of second order. if set tofalse, first order is checked.slope_tol: tolerance for the slope (global) of the approximationerror: specify how to report errors::none,:info,:warn, or:errorare availablewindow: specify window sizes within thelog_rangethat are used for the slope estimation. the default is, to use all window sizes2:N.
Note that since the plot yields more information than throwing an error, when both are specified, the plot is generated first and returned (to be shown/displayed), such that no error is thrown. You can switch to e.g. :warn to get a warning together with the plot.
ManifoldsBase.check_vector_transport — Functioncheck_vector_transport(
M::AbstractManifold,
vector_transport_method::AbstractVectorTransportMethod,
p=rand(M),
X=rand(M; vector_at=p),
Y=rand(M; vector_at=p);
#
exactness_tol::Real = 1e-12,
io::Union{IO,Nothing} = nothing,
limits::Tuple = (-8.0, 0.0),
log_range::AbstractVector = range(limits[1], limits[2]; length=N),
N::Int = 101,
name::String = "inverse retraction",
plot::Bool = false,
second_order::Bool = true
slope_tol::Real = 0.1,
error::Symbol = :none,
window = nothing,
)Check numerically wether the retraction vector_transport_to is correct, by selecting a set of points $q_i = \exp_p (t_i X)$ where $t$ takes all values from log_range, to then compare parallel_transport_to to the vector_transport_method applied to the vector Y.
This requires the exp, parallel_transport_to and norm function to be implemented for the AbstractManifold M.
This implements a method similar to [Bou23, Section 4.8 or Section 6.8].
Note that if the errors are below the given tolerance and the method is exact, no plot is generated,
Keyword arguments
exactness_tol: if all errors are below this tolerance, the differential is considered to be exactio: provide anIOto print the result tolimits: specify the limits in thelog_range, that is the exponent for the rangelog_range: specify the range of points (in log scale) to sample the differential lineN: number of points to verify within thelog_rangedefault range $[10^{-8},10^{0}]$name: name to display in the plotplot: whether to plot the result (ifPlots.jlis loaded). The plot is in log-log-scale. This is returned and can then also be saved.second_order: check whether the retraction is of second order. if set tofalse, first order is checked.slope_tol: tolerance for the slope (global) of the approximationerror: specify how to report errors::none,:info,:warn, or:errorare availablewindow: specify window sizes within thelog_rangethat are used for the slope estimation. the default is, to use all window sizes2:N.
Note that since the plot yields more information than throwing an error, when both are specified, the plot is generated first and returned (to be shown/displayed), such that no error is thrown. You can switch to e.g. :warn to get a warning together with the plot.
Internal functions
The following functions split the check into several parts, for example looking for the best fitting window and finding out the best slope, or plotting the slope.
ManifoldsBase.find_best_slope_window — Function(a, b, i, j) = find_best_slope_window(X, Y, window=nothing; slope::Real=2.0, slope_tol::Real=0.1)Check data X,Y for the largest contiguous interval (window) with a regression line fitting “best”. Among all intervals with a slope within slope_tol to slope the longest one is taken. If no such interval exists, the one with the slope closest to slope is taken.
If the window is set to nothing (default), all window sizes 2,...,length(X) are checked. You can also specify a window size or an array of window sizes.
For each window size, all its translates in the data is checked. For all these (shifted) windows the regression line is computed (with a,b in a + t*b) and the best line is computed.
From the best line the following data is returned
a,bspecifying the regression linea + t*bi,jdetermining the window, i.e the regression line stems from dataX[i], ..., X[j]
This function has to be implemented using some statistics package. loading Statistics.jl provides a default implementation.
ManifoldsBase.plot_slope — Methodplot_slope(x, y;
slope=2,
line_base=0,
a=0,
b=2.0,
i=1,
j=length(x)
)Plot the result from the verification functions on data x,y with two comparison lines
line_base+ tslopeas the global slope(s) the plot could havea+b*ton the interval [x[i],x[j]] for some (best fitting) comparison slope
This function has to be implemented for a certain plotting package. loading Plots.jl provides a default implementation.